IL_4Y4O_262

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GCC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4O_262 not in the Motif Atlas

Geometric match to IL_1Z7F_006

Geometric discrepancy: 0.3721

The information below is about IL_1Z7F_006

Detailed Annotation

Isolated non-canonical cWW

Broad Annotation

No text annotation

Motif group

IL_64928.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

263

Unit IDs

4Y4O|1|2A|G|2141
4Y4O|1|2A|C|2142
4Y4O|1|2A|C|2143
*
4Y4O|1|2A|G|2148
4Y4O|1|2A|G|2149
4Y4O|1|2A|U|2150

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains