IL_4Y4O_264

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.6

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4Y4O|1|2A|C|2350
4Y4O|1|2A|G|2351
4Y4O|1|2A|A|2352
4Y4O|1|2A|G|2353
*
4Y4O|1|2A|C|2364
4Y4O|1|2A|G|2365
4Y4O|1|2A|A|2366
4Y4O|1|2A|G|2367

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 28

50S ribosomal protein L35