IL_4Y4O_331

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGAAC*GGUGCCCCGCGAGGGGAGCC

Length

25 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4O|1|2a|G|1002
4Y4O|1|2a|G|1003
4Y4O|1|2a|A|1004
4Y4O|1|2a|A|1005
4Y4O|1|2a|C|1006
*
4Y4O|1|2a|G|1023
4Y4O|1|2a|G|1024
4Y4O|1|2a|U|1025
4Y4O|1|2a|G|1026
4Y4O|1|2a|C|1027
4Y4O|1|2a|C|1028
4Y4O|1|2a|C|1029
4Y4O|1|2a|C|1030
4Y4O|1|2a|G|1030|||A
4Y4O|1|2a|C|1030|||B
4Y4O|1|2a|G|1030|||C
4Y4O|1|2a|A|1030|||D
4Y4O|1|2a|G|1031
4Y4O|1|2a|G|1032
4Y4O|1|2a|G|1033
4Y4O|1|2a|G|1034
4Y4O|1|2a|A|1035
4Y4O|1|2a|G|1036
4Y4O|1|2a|C|1037
4Y4O|1|2a|C|1038

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains