IL_4Y4O_356

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGAGC*GCGCCGGUGAAAUAC

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4O|1|1A|G|2146
4Y4O|1|1A|G|2147
4Y4O|1|1A|A|2148
4Y4O|1|1A|G|2149
4Y4O|1|1A|C|2150
*
4Y4O|1|1A|G|2182
4Y4O|1|1A|C|2183
4Y4O|1|1A|G|2184
4Y4O|1|1A|C|2185
4Y4O|1|1A|C|2186
4Y4O|1|1A|G|2187
4Y4O|1|1A|G|2188
4Y4O|1|1A|U|2189
4Y4O|1|1A|G|2190
4Y4O|1|1A|A|2191
4Y4O|1|1A|A|2192
4Y4O|1|1A|A|2193
4Y4O|1|1A|U|2194
4Y4O|1|1A|A|2195
4Y4O|1|1A|C|2196

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains