IL_4Y4P_032

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GG*CUAC

Length

6 nucleotides

Bulged bases

4Y4P|1|1A|A|942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_032 not in the Motif Atlas

Geometric match to IL_7Q82_001

Geometric discrepancy: 0.2487

The information below is about IL_7Q82_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4Y4P|1|1A|G|928
4Y4P|1|1A|G|929
*
4Y4P|1|1A|C|940
4Y4P|1|1A|U|941
4Y4P|1|1A|A|942
4Y4P|1|1A|C|943

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Z

50S ribosomal protein L25

Chain 1w

Transfer RNA; tRNA