IL_4Y4P_075

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_075 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.0899

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4Y4P|1|1A|G|1887
4Y4P|1|1A|G|1888
4Y4P|1|1A|G|1889
4Y4P|1|1A|A|1890
4Y4P|1|1A|G|1891
*
4Y4P|1|1A|C|1904
4Y4P|1|1A|G|1905
4Y4P|1|1A|A|1906
4Y4P|1|1A|A|1907
4Y4P|1|1A|C|1908

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1y

Transfer RNA; tRNA