IL_4Y4P_085

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_085 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.2777

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4Y4P|1|1A|G|2132
4Y4P|1|1A|C|2133
4Y4P|1|1A|G|2134
4Y4P|1|1A|U|2135
4Y4P|1|1A|A|2136
4Y4P|1|1A|G|2137
4Y4P|1|1A|G|2138
4Y4P|1|1A|A|2139
4Y4P|1|1A|U|2140
4Y4P|1|1A|A|2141
4Y4P|1|1A|G|2142
*
4Y4P|1|1A|C|2200
4Y4P|1|1A|C|2201

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA