IL_4Y4P_086

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_086 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3403

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4Y4P|1|1A|G|2146
4Y4P|1|1A|G|2147
4Y4P|1|1A|A|2148
4Y4P|1|1A|G|2149
*
4Y4P|1|1A|C|2183
4Y4P|1|1A|G|2184
4Y4P|1|1A|C|2185
4Y4P|1|1A|C|2186
4Y4P|1|1A|G|2187
4Y4P|1|1A|G|2188
4Y4P|1|1A|U|2189
4Y4P|1|1A|G|2190
4Y4P|1|1A|A|2191
4Y4P|1|1A|A|2192
4Y4P|1|1A|A|2193
4Y4P|1|1A|U|2194
4Y4P|1|1A|A|2195
4Y4P|1|1A|C|2196

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA