IL_4Y4P_127

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_127 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1673

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4Y4P|1|1a|G|199
4Y4P|1|1a|G|200
4Y4P|1|1a|C|201
*
4Y4P|1|1a|G|216
4Y4P|1|1a|C|217
4Y4P|1|1a|C|218

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains