IL_4Y4P_158
3D structure
- PDB id
- 4Y4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GCU*G(2MG)C
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4Y4P_158 not in the Motif Atlas
- Geometric match to IL_2O3X_001
- Geometric discrepancy: 0.1433
- The information below is about IL_2O3X_001
- Detailed Annotation
- Stack and bulge
- Broad Annotation
- Stack and bulge
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
4Y4P|1|1a|G|1050
4Y4P|1|1a|C|1051
4Y4P|1|1a|U|1052
*
4Y4P|1|1a|G|1206
4Y4P|1|1a|2MG|1207
4Y4P|1|1a|C|1208
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1c
- 30S ribosomal protein S3
- Chain 1n
- 30S ribosomal protein S14 type Z
- Chain 1w
- Transfer RNA; tRNA
Coloring options: