IL_4Y4P_171

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

4Y4P|1|1a|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_171 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.0503

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4Y4P|1|1a|C|1399
4Y4P|1|1a|5MC|1400
4Y4P|1|1a|G|1401
*
4Y4P|1|1a|C|1501
4Y4P|1|1a|A|1502
4Y4P|1|1a|A|1503
4Y4P|1|1a|G|1504

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1v

mRNA

Chain 1x

Transfer RNA; tRNA