IL_4Y4P_188

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGGACAC*GUG

Length

10 nucleotides

Bulged bases

4Y4P|1|2A|C|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_188 not in the Motif Atlas

Homologous match to IL_8VTW_009

Geometric discrepancy: 0.5165

The information below is about IL_8VTW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

14

Unit IDs

4Y4P|1|2A|C|272|||J
4Y4P|1|2A|G|274
4Y4P|1|2A|G|275
4Y4P|1|2A|A|276
4Y4P|1|2A|C|277
4Y4P|1|2A|A|278
4Y4P|1|2A|C|279
*
4Y4P|1|2A|G|361
4Y4P|1|2A|U|362
4Y4P|1|2A|G|363

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains