IL_4Y4P_235

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

4Y4P|1|2A|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_235 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.292

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4Y4P|1|2A|U|1481
4Y4P|1|2A|G|1482
*
4Y4P|1|2A|C|1506
4Y4P|1|2A|A|1507
4Y4P|1|2A|A|1508
4Y4P|1|2A|C|1509
4Y4P|1|2A|A|1509|||A
4Y4P|1|2A|A|1509|||B
4Y4P|1|2A|G|1510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains