IL_4Y4P_276

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4Y4P|1|2A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_276 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0558

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4Y4P|1|2A|U|2636
4Y4P|1|2A|U|2637
4Y4P|1|2A|G|2638
4Y4P|1|2A|A|2639
4Y4P|1|2A|G|2640
*
4Y4P|1|2A|C|2774
4Y4P|1|2A|A|2775
4Y4P|1|2A|A|2776
4Y4P|1|2A|G|2777
4Y4P|1|2A|A|2778
4Y4P|1|2A|U|2779
4Y4P|1|2A|G|2780
4Y4P|1|2A|A|2781
4Y4P|1|2A|G|2782

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13