IL_4Y4P_302

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4Y4P|1|2a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_302 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0774

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4Y4P|1|2a|G|148
4Y4P|1|2a|A|149
4Y4P|1|2a|C|150
4Y4P|1|2a|A|151
4Y4P|1|2a|A|152
4Y4P|1|2a|C|153
*
4Y4P|1|2a|G|168
4Y4P|1|2a|C|169
4Y4P|1|2a|U|170
4Y4P|1|2a|A|171
4Y4P|1|2a|A|172
4Y4P|1|2a|U|173
4Y4P|1|2a|C|174

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20