IL_4Y4P_388

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

4Y4P|1|2A|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_388 not in the Motif Atlas

Geometric match to IL_9DFE_094

Geometric discrepancy: 0.1031

The information below is about IL_9DFE_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

4Y4P|1|2A|A|2459
4Y4P|1|2A|U|2460
4Y4P|1|2A|C|2461
*
4Y4P|1|2A|G|2489
4Y4P|1|2A|G|2490
4Y4P|1|2A|U|2491
4Y4P|1|2A|U|2492
4Y4P|1|2A|U|2493

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16

Chain 2w

Transfer RNA; tRNA