IL_4YBB_047

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GCUGCAU*AUG(2MG)C

Length

12 nucleotides

Bulged bases

4YBB|1|AA|C|1054

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_047 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.3806

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4YBB|1|AA|G|1050
4YBB|1|AA|C|1051
4YBB|1|AA|U|1052
4YBB|1|AA|G|1053
4YBB|1|AA|C|1054
4YBB|1|AA|A|1055
4YBB|1|AA|U|1056
*
4YBB|1|AA|A|1204
4YBB|1|AA|U|1205
4YBB|1|AA|G|1206
4YBB|1|AA|2MG|1207
4YBB|1|AA|C|1208

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14