IL_4YBB_060

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GU(5MC)AC*GAAGUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_060 not in the Motif Atlas

Homologous match to IL_5J7L_060

Geometric discrepancy: 0.0687

The information below is about IL_5J7L_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YBB|1|AA|G|1405
4YBB|1|AA|U|1406
4YBB|1|AA|5MC|1407
4YBB|1|AA|A|1408
4YBB|1|AA|C|1409
*
4YBB|1|AA|G|1491
4YBB|1|AA|A|1492
4YBB|1|AA|A|1493
4YBB|1|AA|G|1494
4YBB|1|AA|U|1495
4YBB|1|AA|C|1496

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain DA

Large subunit ribosomal RNA; LSU rRNA