IL_4YBB_078

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4YBB|1|BA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_078 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.065

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4YBB|1|BA|G|147
4YBB|1|BA|G|148
4YBB|1|BA|A|149
4YBB|1|BA|U|150
4YBB|1|BA|A|151
4YBB|1|BA|A|152
4YBB|1|BA|C|153
*
4YBB|1|BA|G|168
4YBB|1|BA|C|169
4YBB|1|BA|U|170
4YBB|1|BA|A|171
4YBB|1|BA|A|172
4YBB|1|BA|U|173
4YBB|1|BA|A|174
4YBB|1|BA|C|175

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BT

30S ribosomal protein S20