IL_4YBB_110

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

UGGUC*GACCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGGUC,GACCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_110 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3789

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4YBB|1|BA|U|986
4YBB|1|BA|G|987
4YBB|1|BA|G|988
4YBB|1|BA|U|989
4YBB|1|BA|C|990
*
4YBB|1|BA|G|1215
4YBB|1|BA|A|1216
4YBB|1|BA|C|1217
4YBB|1|BA|C|1218
4YBB|1|BA|A|1219

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BN

30S ribosomal protein S14

Chain BS

30S ribosomal protein S19