IL_4YBB_113

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CACG*CGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CACG,CGUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_113 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.295

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4YBB|1|BA|C|999
4YBB|1|BA|A|1000
4YBB|1|BA|C|1001
4YBB|1|BA|G|1002
*
4YBB|1|BA|C|1038
4YBB|1|BA|G|1039
4YBB|1|BA|U|1040
4YBB|1|BA|G|1041

Current chains

Chain BA

16S rRNA

Nearby chains