IL_4YBB_127

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUC,GAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_127 not in the Motif Atlas

Geometric match to IL_4KR9_002

Geometric discrepancy: 0.1797

The information below is about IL_4KR9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4YBB|1|BA|C|1263
4YBB|1|BA|U|1264
4YBB|1|BA|C|1265
*
4YBB|1|BA|G|1270
4YBB|1|BA|A|1271
4YBB|1|BA|G|1272

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BN

30S ribosomal protein S14

Chain BS

30S ribosomal protein S19