IL_4YBB_148

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

UGUG*CACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGUG,CACA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_148 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2073

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4YBB|1|CA|U|286
4YBB|1|CA|G|287
4YBB|1|CA|U|288
4YBB|1|CA|G|289
*
4YBB|1|CA|C|351
4YBB|1|CA|A|352
4YBB|1|CA|C|353
4YBB|1|CA|A|354

Current chains

Chain CA

23S rRNA

Nearby chains