IL_4YBB_180

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4YBB|1|CA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_180 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1768

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4YBB|1|CA|C|1043
4YBB|1|CA|C|1044
4YBB|1|CA|C|1045
4YBB|1|CA|A|1046
4YBB|1|CA|G|1047
4YBB|1|CA|A|1048
4YBB|1|CA|C|1049
4YBB|1|CA|A|1050
4YBB|1|CA|G|1051
*
4YBB|1|CA|U|1108
4YBB|1|CA|C|1109
4YBB|1|CA|G|1110
4YBB|1|CA|A|1111
4YBB|1|CA|G|1112

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein L36

Chain CG

50S ribosomal protein L6