IL_4YBB_185

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4YBB|1|CA|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_185 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0597

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4YBB|1|CA|C|1208
4YBB|1|CA|U|1209
4YBB|1|CA|G|1210
4YBB|1|CA|C|1211
4YBB|1|CA|G|1212
4YBB|1|CA|A|1213
4YBB|1|CA|A|1214
4YBB|1|CA|G|1215
*
4YBB|1|CA|U|1234
4YBB|1|CA|G|1235
4YBB|1|CA|G|1236
4YBB|1|CA|A|1237
4YBB|1|CA|G|1238

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CR

50S ribosomal protein L20