IL_4YBB_188

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_188 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.0941

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4YBB|1|CA|C|1319
4YBB|1|CA|C|1320
4YBB|1|CA|A|1321
4YBB|1|CA|A|1322
4YBB|1|CA|C|1323
*
4YBB|1|CA|G|1331
4YBB|1|CA|G|1332
4YBB|1|CA|G|1333

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CT

50S ribosomal protein L22

Chain CU

50S ribosomal protein L23