IL_4YBB_197

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_197 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1789

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4YBB|1|CA|U|1474
4YBB|1|CA|G|1475
4YBB|1|CA|U|1476
4YBB|1|CA|A|1477
4YBB|1|CA|G|1478
*
4YBB|1|CA|U|1513
4YBB|1|CA|G|1514
4YBB|1|CA|A|1515
4YBB|1|CA|G|1516
4YBB|1|CA|G|1517

Current chains

Chain CA

23S rRNA

Nearby chains