IL_4YBB_226

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

UUGA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_226 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2891

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4YBB|1|CA|U|2105
4YBB|1|CA|U|2106
4YBB|1|CA|G|2107
4YBB|1|CA|A|2108
*
4YBB|1|CA|U|2181
4YBB|1|CA|U|2182
4YBB|1|CA|A|2183
4YBB|1|CA|A|2184

Current chains

Chain CA

23S rRNA

Nearby chains