IL_4YBB_343

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CAU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAU,AUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_343 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.135

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4YBB|1|DA|C|2096
4YBB|1|DA|A|2097
4YBB|1|DA|U|2098
*
4YBB|1|DA|A|2191
4YBB|1|DA|U|2192
4YBB|1|DA|G|2193

Current chains

Chain DA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain DH

50S ribosomal protein L9