IL_4YBB_392

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_392 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2188

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4YBB|1|BA|5MC|1407
4YBB|1|BA|A|1408
4YBB|1|BA|C|1409
*
4YBB|1|BA|G|1491
4YBB|1|BA|A|1492
4YBB|1|BA|A|1493
4YBB|1|BA|G|1494

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BL

30S ribosomal protein S12

Chain CA

Large subunit ribosomal RNA; LSU rRNA