IL_4YBB_396

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_396 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0475

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4YBB|1|CA|G|1666
4YBB|1|CA|G|1667
4YBB|1|CA|A|1668
4YBB|1|CA|A|1669
4YBB|1|CA|C|1670
4YBB|1|CA|U|1671
4YBB|1|CA|A|1672
4YBB|1|CA|G|1673
4YBB|1|CA|G|1674
*
4YBB|1|CA|C|1990
4YBB|1|CA|U|1991
4YBB|1|CA|G|1992
4YBB|1|CA|U|1993
4YBB|1|CA|C|1994

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CL

50S ribosomal protein L14