IL_4YBB_412

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_412 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0428

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4YBB|1|DA|U|1851
4YBB|1|DA|U|1852
4YBB|1|DA|A|1853
4YBB|1|DA|A|1854
4YBB|1|DA|U|1855
4YBB|1|DA|U|1856
4YBB|1|DA|G|1857
4YBB|1|DA|A|1858
4YBB|1|DA|U|1859
4YBB|1|DA|G|1860
*
4YBB|1|DA|U|1882
4YBB|1|DA|U|1883
4YBB|1|DA|G|1884
4YBB|1|DA|A|1885
4YBB|1|DA|U|1886
4YBB|1|DA|C|1887
4YBB|1|DA|G|1888
4YBB|1|DA|A|1889
4YBB|1|DA|A|1890
4YBB|1|DA|G|1891

Current chains

Chain DA

23S rRNA

Nearby chains