IL_4YHH_018

3D structure

PDB id

4YHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CGCAAUG*UGACG

Length

12 nucleotides

Bulged bases

4YHH|1|A|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YHH_018 not in the Motif Atlas

Geometric match to IL_4LFB_048

Geometric discrepancy: 0.3767

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.1

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4YHH|1|A|C|370
4YHH|1|A|G|371
4YHH|1|A|C|372
4YHH|1|A|A|373
4YHH|1|A|A|374
4YHH|1|A|U|375
4YHH|1|A|G|376
*
4YHH|1|A|U|387
4YHH|1|A|G|388
4YHH|1|A|A|389
4YHH|1|A|C|390
4YHH|1|A|G|391

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16