IL_4YHH_058

3D structure

PDB id

4YHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YHH_058 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1136

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4YHH|1|A|C|1303
4YHH|1|A|G|1304
4YHH|1|A|G|1305
4YHH|1|A|A|1306
4YHH|1|A|U|1307
4YHH|1|A|U|1308
*
4YHH|1|A|A|1329
4YHH|1|A|U|1330
4YHH|1|A|G|1331
4YHH|1|A|A|1332
4YHH|1|A|A|1333
4YHH|1|A|G|1334

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain V

30S ribosomal protein Thx