IL_4YHH_070
3D structure
- PDB id
- 4YHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- GGUGA*UACC
- Length
- 9 nucleotides
- Bulged bases
- 4YHH|1|A|G|31
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YHH_070 not in the Motif Atlas
- Geometric match to IL_7VYX_002
- Geometric discrepancy: 0.2433
- The information below is about IL_7VYX_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
4YHH|1|A|G|28
4YHH|1|A|G|29
4YHH|1|A|U|30
4YHH|1|A|G|31
4YHH|1|A|A|32
*
4YHH|1|A|U|552
4YHH|1|A|A|553
4YHH|1|A|C|554
4YHH|1|A|C|555
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
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