IL_4YHH_074

3D structure

PDB id

4YHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

ACCC*GUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YHH_074 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2055

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4YHH|1|A|A|185
4YHH|1|A|C|186
4YHH|1|A|C|187
4YHH|1|A|C|188
*
4YHH|1|A|G|190|||K
4YHH|1|A|U|190|||L
4YHH|1|A|G|191
4YHH|1|A|U|192

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20