IL_4YPB_010

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4YPB|1|QA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_010 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0743

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4YPB|1|QA|G|148
4YPB|1|QA|A|149
4YPB|1|QA|C|150
4YPB|1|QA|A|151
4YPB|1|QA|A|152
4YPB|1|QA|C|153
*
4YPB|1|QA|G|168
4YPB|1|QA|C|169
4YPB|1|QA|U|170
4YPB|1|QA|A|171
4YPB|1|QA|A|172
4YPB|1|QA|U|173
4YPB|1|QA|C|174

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20