IL_4YPB_020

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_020 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1014

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4YPB|1|QA|G|450
4YPB|1|QA|A|451
4YPB|1|QA|A|452
4YPB|1|QA|A|453
4YPB|1|QA|C|454
4YPB|1|QA|C|455
*
4YPB|1|QA|G|476
4YPB|1|QA|A|477
4YPB|1|QA|C|479
4YPB|1|QA|U|480
4YPB|1|QA|G|481
4YPB|1|QA|A|482
4YPB|1|QA|C|483

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16