IL_4YPB_032
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 4YPB|1|QA|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_032 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.1184
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
4YPB|1|QA|G|683
4YPB|1|QA|A|684
4YPB|1|QA|G|685
4YPB|1|QA|U|686
4YPB|1|QA|A|687
4YPB|1|QA|G|688
*
4YPB|1|QA|C|699
4YPB|1|QA|G|700
4YPB|1|QA|C|701
4YPB|1|QA|A|702
4YPB|1|QA|G|703
4YPB|1|QA|A|704
4YPB|1|QA|U|705
4YPB|1|QA|A|706
4YPB|1|QA|C|707
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QK
- 30S ribosomal protein S11
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
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