IL_4YPB_048

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_048 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.3906

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4YPB|1|QA|G|1124
4YPB|1|QA|U|1125
4YPB|1|QA|U|1126
4YPB|1|QA|G|1127
*
4YPB|1|QA|C|1145
4YPB|1|QA|A|1146
4YPB|1|QA|C|1147
4YPB|1|QA|U|1148
4YPB|1|QA|C|1149

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QI

30S ribosomal protein S9

Chain QJ

30S ribosomal protein S10