IL_4YPB_051

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

4YPB|1|QA|U|1257, 4YPB|1|QA|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_051 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1127

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4YPB|1|QA|G|1255
4YPB|1|QA|A|1256
4YPB|1|QA|U|1257
4YPB|1|QA|G|1258
*
4YPB|1|QA|C|1277
4YPB|1|QA|U|1278
4YPB|1|QA|A|1279
4YPB|1|QA|A|1280
4YPB|1|QA|U|1281
4YPB|1|QA|C|1282

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QJ

30S ribosomal protein S10

Chain QN

30S ribosomal protein S14