3D structure

PDB id
4YPB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CAG*UGGG
Length
7 nucleotides
Bulged bases
4YPB|1|RA|G|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4YPB_076 not in the Motif Atlas
Homologous match to IL_7RQB_012
Geometric discrepancy: 0.115
The information below is about IL_7RQB_012
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_38958.7
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
15

Unit IDs

4YPB|1|RA|C|288
4YPB|1|RA|A|289
4YPB|1|RA|G|290
*
4YPB|1|RA|U|350
4YPB|1|RA|G|351
4YPB|1|RA|G|352
4YPB|1|RA|G|353

Current chains

Chain RA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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