IL_4YPB_083

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4YPB|1|RA|G|801, 4YPB|1|RA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_083 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0527

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4YPB|1|RA|G|674
4YPB|1|RA|A|675
4YPB|1|RA|A|676
4YPB|1|RA|A|677
4YPB|1|RA|C|678
*
4YPB|1|RA|G|799
4YPB|1|RA|A|800
4YPB|1|RA|G|801
4YPB|1|RA|A|802
4YPB|1|RA|U|803
4YPB|1|RA|A|804
4YPB|1|RA|G|805
4YPB|1|RA|C|806

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15