IL_4YPB_089

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_089 not in the Motif Atlas

Homologous match to IL_5J7L_266

Geometric discrepancy: 0.104

The information below is about IL_5J7L_266

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4YPB|1|RA|C|837
4YPB|1|RA|C|838
*
4YPB|1|RA|G|940
4YPB|1|RA|A|941
4YPB|1|RA|G|942

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RP

50S ribosomal protein L15