IL_4YPB_111

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4YPB|1|RA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_111 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0568

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4YPB|1|RA|C|1208
4YPB|1|RA|G|1209
4YPB|1|RA|A|1210
4YPB|1|RA|U|1211
4YPB|1|RA|G|1212
4YPB|1|RA|A|1213
4YPB|1|RA|A|1214
4YPB|1|RA|G|1215
*
4YPB|1|RA|U|1234
4YPB|1|RA|G|1235
4YPB|1|RA|G|1236
4YPB|1|RA|A|1237
4YPB|1|RA|G|1238

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RU

50S ribosomal protein L20