IL_4YPB_117

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_117 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.1844

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4YPB|1|RA|U|1357
4YPB|1|RA|G|1358
4YPB|1|RA|A|1359
4YPB|1|RA|A|1360
4YPB|1|RA|G|1361
*
4YPB|1|RA|C|1370
4YPB|1|RA|G|1371
4YPB|1|RA|U|1372
4YPB|1|RA|A|1373
4YPB|1|RA|G|1374

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain R7

50S ribosomal protein L34

Chain RD

50S ribosomal protein L2