IL_4YPB_121

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

4YPB|1|RA|A|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_121 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0863

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4YPB|1|RA|C|1437
4YPB|1|RA|U|1438
4YPB|1|RA|A|1439
4YPB|1|RA|G|1440
*
4YPB|1|RA|C|1551
4YPB|1|RA|G|1552
4YPB|1|RA|A|1553
4YPB|1|RA|A|1554
4YPB|1|RA|G|1555

Current chains

Chain RA

23S rRNA

Nearby chains