IL_4YPB_125

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

4YPB|1|RA|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_125 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.3315

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4YPB|1|RA|U|1481
4YPB|1|RA|G|1482
*
4YPB|1|RA|C|1506
4YPB|1|RA|A|1507
4YPB|1|RA|A|1508
4YPB|1|RA|C|1509
4YPB|1|RA|A|1509|||A
4YPB|1|RA|A|1509|||B
4YPB|1|RA|G|1510

Current chains

Chain RA

23S rRNA

Nearby chains