IL_4YPB_127

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4YPB|1|RA|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_127 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.105

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4YPB|1|RA|G|1526
4YPB|1|RA|G|1527
4YPB|1|RA|A|1528
4YPB|1|RA|A|1529
4YPB|1|RA|G|1530
*
4YPB|1|RA|U|1541
4YPB|1|RA|G|1542
4YPB|1|RA|A|1543
4YPB|1|RA|C|1544
4YPB|1|RA|A|1545
4YPB|1|RA|A|1545|||A
4YPB|1|RA|C|1546

Current chains

Chain RA

23S rRNA

Nearby chains