IL_4YPB_149

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGCGUAGGAUAG*CCUG

Length

17 nucleotides

Bulged bases

4YPB|1|RA|G|2112, 4YPB|1|RA|U|2113, 4YPB|1|RA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_149 not in the Motif Atlas

Geometric match to IL_4K27_003

Geometric discrepancy: 0.3823

The information below is about IL_4K27_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4YPB|1|RA|C|2108
4YPB|1|RA|U|2109
4YPB|1|RA|G|2110
4YPB|1|RA|C|2111
4YPB|1|RA|G|2112
4YPB|1|RA|U|2113
4YPB|1|RA|A|2114
4YPB|1|RA|G|2115
4YPB|1|RA|G|2116
4YPB|1|RA|A|2117
4YPB|1|RA|U|2118
4YPB|1|RA|A|2119
4YPB|1|RA|G|2120
*
4YPB|1|RA|C|2178
4YPB|1|RA|C|2179
4YPB|1|RA|U|2180
4YPB|1|RA|G|2181

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QW

Transfer RNA; tRNA